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MDPy

Quick start

  • Overview
  • Framework
  • Installation
  • Performance
  • Cite MDPy

Theory behind MDPy

  • Unit system
  • Cell list
  • Ewald summation
  • Thermostat
  • Barostat

Tutorial

  • How to use mdpy.unit package
  • How to create an ensemble

API reference

  • mdpy.unit
    • mdpy.unit.BaseDimension
    • mdpy.unit.Unit
    • mdpy.unit.Quantity
  • mdpy.core
    • mdpy.core.Particle
    • mdpy.core.TileList
    • mdpy.core.Topology
    • mdpy.core.State
    • mdpy.core.Trajectory
    • mdpy.core.Ensemble
  • mdpy.io
    • mdpy.io.PDBParser
    • mdpy.io.PDBWriter
    • mdpy.io.DCDParser
    • mdpy.io.XYZParser
    • mdpy.io.PSFParser
    • mdpy.io.CharmmTopparParser
    • mdpy.io.HDF5Parser
    • mdpy.io.HDF5Writer
    • mdpy.io.LogWriter
  • mdpy.constraint
    • mdpy.constraint.ElectrostaticCutoffConstraint
    • mdpy.constraint.ElectrostaticPMEConstraint
    • mdpy.constraint.CharmmVDWConstraint
    • mdpy.constraint.CharmmBondConstraint
    • mdpy.constraint.CharmmAngleConstraint
    • mdpy.constraint.CharmmDihedralConstraint
    • mdpy.constraint.CharmmImproperConstraint
  • mdpy.recipe
    • mdpy.recipe.CharmmRecipe
  • mdpy.minimizer
    • mdpy.minimizer.SteepestDescentMinimizer
    • mdpy.minimizer.ConjugateGradientMinimizer
  • mdpy.integrator
    • mdpy.integrator.VerletIntegrator
    • mdpy.integrator.LangevinIntegrator

Exception reference

  • Exception reference

Reference

  • Reference
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mdpy.core#

mdpy.core.Particle

mdpy.core.TileList

mdpy.core.Topology

mdpy.core.State

mdpy.core.Trajectory

mdpy.core.Ensemble

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