Index _ | B | C | D | E | H | L | P | Q | S | T | U | V | X _ __init__() (mdpy.constraint.CharmmAngleConstraint method) (mdpy.constraint.CharmmBondConstraint method) (mdpy.constraint.CharmmDihedralConstraint method) (mdpy.constraint.CharmmImproperConstraint method) (mdpy.constraint.CharmmVDWConstraint method) (mdpy.constraint.ElectrostaticCutoffConstraint method) (mdpy.constraint.ElectrostaticPMEConstraint method) (mdpy.core.Ensemble method) (mdpy.core.Particle method) (mdpy.core.State method) (mdpy.core.TileList method) (mdpy.core.Topology method) (mdpy.core.Trajectory method) (mdpy.integrator.LangevinIntegrator method) (mdpy.integrator.VerletIntegrator method) (mdpy.io.CharmmTopparParser method) (mdpy.io.DCDParser method) (mdpy.io.HDF5Parser method) (mdpy.io.HDF5Writer method) (mdpy.io.LogWriter method) (mdpy.io.PDBParser method) (mdpy.io.PDBWriter method) (mdpy.io.PSFParser method) (mdpy.io.XYZParser method) (mdpy.minimizer.ConjugateGradientMinimizer method) (mdpy.minimizer.SteepestDescentMinimizer method) (mdpy.recipe.CharmmRecipe method) (mdpy.unit.BaseDimension method) (mdpy.unit.Quantity method) (mdpy.unit.Unit method) B BaseDimension (class in mdpy.unit) C CharmmAngleConstraint (class in mdpy.constraint) CharmmBondConstraint (class in mdpy.constraint) CharmmDihedralConstraint (class in mdpy.constraint) CharmmImproperConstraint (class in mdpy.constraint) CharmmRecipe (class in mdpy.recipe) CharmmTopparParser (class in mdpy.io) CharmmVDWConstraint (class in mdpy.constraint) ConjugateGradientMinimizer (class in mdpy.minimizer) D DCDParser (class in mdpy.io) E ElectrostaticCutoffConstraint (class in mdpy.constraint) ElectrostaticPMEConstraint (class in mdpy.constraint) Ensemble (class in mdpy.core) H HDF5Parser (class in mdpy.io) HDF5Writer (class in mdpy.io) L LangevinIntegrator (class in mdpy.integrator) LogWriter (class in mdpy.io) P Particle (class in mdpy.core) PDBParser (class in mdpy.io) PDBWriter (class in mdpy.io) PSFParser (class in mdpy.io) Q Quantity (class in mdpy.unit) S State (class in mdpy.core) SteepestDescentMinimizer (class in mdpy.minimizer) T TileList (class in mdpy.core) Topology (class in mdpy.core) Trajectory (class in mdpy.core) U Unit (class in mdpy.unit) V VerletIntegrator (class in mdpy.integrator) X XYZParser (class in mdpy.io)